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statistics:msvm-rfe [2011/12/29 10:07 am PST]
John Colby [Obtain top features across all folds]
statistics:msvm-rfe [2011/12/29 10:10 am PST] (current)
John Colby [Setup notes]
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   * As written, these scripts use an excellent ''​qsub''​ wrapper called ''​fsl_sub''​ that is included with the [[http://​www.fmrib.ox.ac.uk/​fsl/​|FSL]] neuroimaging toolset. If yours is different, you'll need to modify these calls accordingly.   * As written, these scripts use an excellent ''​qsub''​ wrapper called ''​fsl_sub''​ that is included with the [[http://​www.fmrib.ox.ac.uk/​fsl/​|FSL]] neuroimaging toolset. If yours is different, you'll need to modify these calls accordingly.
   * If ''​e1071''​ is installed, but there are error messages that it can't be found, you probably installed it in some user specific location. You can add this area to the default R search path by setting the ''​R_LIBS''​ unix environment variable.   * If ''​e1071''​ is installed, but there are error messages that it can't be found, you probably installed it in some user specific location. You can add this area to the default R search path by setting the ''​R_LIBS''​ unix environment variable.
-  * The main ''​msvmRFE.R''​ functions file is sourced in several of these scripts. It is setup to work relative to the ''​demo''​ directory, as downloaded, but you might want to hard-code your system-specific full path to this file for greater flexibility.+  * The main ''​msvmRFE.R''​ functions file is sourced in several of these scripts. It is setup to work relative to the ''​demo''​ directory, as downloaded, but you might want to hard-code your system-specific full path to this file so you don't always have to call it from the same directory.
  
 ===== Usage ===== ===== Usage =====
statistics/msvm-rfe.txt ยท Last modified: 2011/12/29 10:10 am PST by John Colby
 
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